Immunophenotyping by Flow Cytometry

Also Known As:
Flow Cytometry

This article was last modified on November 9, 2021

Learn more about...

Complete Blood Count (CBC)

At a Glance

Why Get Tested?

To help diagnose and classify a leukemia or lymphoma; to help guide treatment; to aid in determining prognosis; to detect and evaluate leukemia or lymphoma cells that remain after treatment or at disease relapse

When To Get Tested?

When you have signs and symptoms that a health care practitioner thinks may be due to leukemia or lymphoma; to help classify the type of leukemia or lymphoma, identify treatment options, and predict the likely course of the disease; to evaluate whether treatment has been effective or detect disease that remains or comes back after treatment (relapse or recurrence)

Sample Required?

A blood sample is obtained by inserting a needle into a vein. A bone marrow sample may be collected from the hip bone by a trained health care practitioner (Bone Marrow Aspiration and Biopsy). Sometimes, a tissue sample, such as from a lymph node, is obtained using a biopsy or fine needle aspiration (FNA) procedure. Body fluid samples are obtained through collection of the fluid in a container or by inserting a needle into the body cavity and aspirating a portion of the fluid with a syringe.

Test Preparation Needed?

None

What is being tested?

Immunophenotyping by flow cytometry is a laboratory method that detects the presence or absence of white blood cell (WBC) markers called antigens. These antigens are protein structures found on or within WBCs. Specific groupings of these antigens are normally present on or within WBCs and are unique to specific cell types and stages of cell maturation. Additionally, specific patterns of antigens are present on abnormal cells seen in leukemias and lymphomas. Flow cytometry immunophenotyping may be useful in helping to diagnose, classify, treat and determine prognosis of these blood cell cancers.

Leukemias and lymphomas are caused by an abnormal white blood cell that begins to divide uncontrollably, making numerous copies of itself (clones). The abnormal cells grow, but they do not fight infections or perform other functions like normal WBCs. They do not die at a normal rate, so they accumulate in the bone marrow, lymph nodes, or other tissues. As the number of abnormal cells increases in the bone marrow, they may crowd out and inhibit the production of normal white blood cells, red blood cells, and platelets, and eventually abnormal cells may also be released into the blood. As the number of abnormal cells increase in a lymph node, the size of the lymph node increases. Sometimes lymphomas also involve the blood and/or bone marrow.

If you have a leukemia or lymphoma, routine tests such as a complete blood count (CBC) and a WBC differential may show an increased number of white blood cells with a predominance of one type. These tests may suggest lymphoma or leukemia, but more information is generally needed to confirm a diagnosis and to identify a specific type of leukemia or lymphoma.

Flow cytometry immunophenotyping may be performed on blood, bone marrow, or other samples to provide this additional information. It can detect normal cells as well as abnormal cells whose pattern of markers are typically seen with specific types of leukemia and lymphoma. The results may also be used to predict how aggressive the cancer will be and/or whether it will respond to certain treatment.

Most of the antigens that flow cytometry immunophenotyping detects are identified by a CD (clusters of differentiation or cluster designation) number. CD numbers represent a naming convention that is based on international consensus. While hundreds of antigens have been identified and have a unique CD number, only a small number of these are routinely used.

Common Questions

How is the test used?

Flow cytometry immunophenotyping is used primarily to help diagnose and classify blood cell cancers (leukemias and lymphomas) and to help guide their treatment. It may be used in follow up to a complete blood count (CBC) and WBC differential that show an increased number of lymphocytes or the presence of immature blood cells or other abnormal cell counts.

Flow cytometry immunophenotyping may also be used:

To predict how aggressive the cancer will be
To predict whether the cancer will respond to certain treatment
To help determine whether treatment of leukemia or lymphoma has been successful
To determine whether the disease remains despite treatment (residual disease) or has come back after successful treatment (recurrent disease)

There are some other uses of this testing that are less common, but they are not addressed in this article.

When is it ordered?

Flow cytometry immunophenotyping may be ordered when you have an increased number of lymphocytes (or sometimes an increase in another type of white blood cell, WBC), anemia, a decreased platelet count, or immature WBCs that are not normally seen in the blood. These may be the first indication of a possible blood cell cancer.

Testing may be done when you have signs and symptoms of leukemia and lymphoma, though they may be unremarkable, mild, or nonspecific early in the disease.

Examples of signs and symptoms of a blood cell cancer include:

Feeling tired or rundown, weakness
Unexplained loss of weight or appetite
Shortness of breath during normal physical activity
Pale skin
Bleeding or bruising easily
Fever
Bone and joint pain
Enlarged lymph nodes, spleen, liver, kidneys, and/or testicles
Headaches
Vomiting
Night sweats

Testing may also be ordered after you have been treated for leukemia or lymphoma.

What does the test result mean?

A pathologist, often one specializing in the study of blood diseases and/or blood cell cancers (a hematopathologist), will consider the results from the complete blood count (CBC), differential, blood smear, bone marrow findings, and flow cytometry immunophenotyping as well as other tests in order to provide a diagnostic interpretation. A laboratory report will typically include specific results from the tests as well as an analysis of what those results mean.

The markers (antigens) that are present on the cells as detected by flow cytometry immunophenotyping will help characterize the cells present. A normal cell will display a pattern of antigens that correlates with the type and maturity of the cell. (Blood cells normally mature in the bone marrow and are released into circulation when they are mature or nearly mature.) The results from your immunophenotyping are compared to the pattern of antigens for “normal” cells as well as to patterns that are associated with abnormal cells (e.g., cells present with leukemias and lymphomas).

Your health care practitioner will consider the flow cytometry immunophenotyping results together with your clinical history, physical examination, signs and symptoms, as well as all laboratory tests to help make a diagnosis.

Each person’s condition will be unique. You may have (or lack) certain antigens that are typically seen, yet you may still be diagnosed with a specific type of leukemia or lymphoma.

Here is one example:

The blood of an older child or adult normally contains some mature B cells, but circulating immature B cells are not normally present.
Both mature and immature B cells are normally positive for the CD19 marker.
Mature B cells are normally positive for CD20 but not CD34. CD20 is a marker of maturity and CD34 is a marker of immaturity. In fact, these two markers are not normally expressed together.
Now, if an adult has a small number of mature B cells but also has a large number of immature B cells which are positive for CD19 (remember, CD19 is a B-cell marker) and also positive for both CD34 and CD20 (which identifies those cells are both immature and abnormal), then the person has an immature B-cell leukemia known as B-lymphoblastic leukemia.
Interestingly, some of the other antigens present might suggest a specific genetic subtype of B-lymphoblastic leukemia, which also might have a certain prognosis.
More importantly, there are newer classes of treatment options like CAR-T therapy, bispecific T-cell engagers, and monoclonal antibodies that selectively target molecules like CD19 or CD20. These newer treatments may have reduced side effects compared to conventional chemotherapy (newer targeted therapies are usually added to traditional chemotherapy).

Abnormal immunophenotype profiles are usually present in:

Acute myeloid leukemia
Acute lymphoblastic leukemia (ALL)
Chronic lymphocytic leukemia (CLL)
B-cell and T-cell non-Hodgkin lymphomas
Multiple myeloma

The following summarizes markers that are often expressed in certain types of cells:

Cell	Markers
Immature precursor cells	CD34, CD117, TdT
B-lymphocytes	CD19, CD20, CD22, CD79a, immunoglobulin light chains (kappa or lambda)
T-lymphocytes	CD2, CD3, CD5, CD7, and either CD4 or CD8
Myeloid cells (granulocytes)	MPO (myeloperoxidase), CD13, CD33
Natural killer (NK) cells	CD16, CD56

The following summarizes markers that suggest certain types of cell differentiation:

Cell	Markers
Megakaryocytic differentiation; Platelets	CD41, CD42b, CD61
Red blood cell (erythroid) differentiation	CD235a
Monocytic differentiation	CD11b, CD14, CD33, HLA-DR
Hairy cell leukemia	CD11c, CD25, CD103

Is there anything else I should know?

T-lymphocyte subset analysis based on CD3, CD4 and CD8 expression is performed separately to monitor people with HIV/AIDS, for example.

Is there a reason to choose one type of sample (blood, bone marrow, or tissue) over another for testing?

The type of sample to be tested is up to your healthcare practitioner and must be representative of your cancer. If abnormal cells are present in the bloodstream, a blood sample is often used for flow cytometry immunophenotyping as it is easy to obtain and less invasive than other collection methods. However, lymphoma cells may or may not find their way to the bloodstream and might require other collection techniques.

Can flow cytometry immunophenotyping be done at my local laboratory?

It depends. It is not offered in every laboratory, but many larger hospitals and academic medical centers perform the testing or your sample may be sent to a reference laboratory.

Can results of testing be used to determine the course of my cancer?

Diagnosis of leukemia or lymphoma is based on the visual examination of a blood smear and/or bone marrow biopsy and aspiration for the presence of certain cell types. Depending upon flow cytometry immunophenotyping results, a healthcare practitioner may determine how likely your cancer will respond to treatment and how aggressive the treatment might be. The course of treatment for your cancer will be determined by your health care practitioner and their team based on flow cytometry immunophenotyping and other tests that might be performed.

Will my WBC antigens change?

It depends. The antigens on specific leukemia or lymphoma cells may remain the same over time. However, treatment with chemotherapy may eliminate the abnormal cells, and if treatment is successful, normal white blood cells (WBCs) will replace abnormal cells. Because of this, immunophenotyping results will be different by reflecting the current population of WBCs that would be present in an individual in remission. Sometimes, however, the cancer cells adapt to evade the therapy by not expressing anymore an antigen that they expressed earlier, which might have been targeted by a monoclonal antibody or other therapy, like CAR T-cells.

Are any other methods used for immunophenotyping?

Originally, glass slides with fixed tissue sections were treated with an antibody that was specific for a type of antigen typically found on certain abnormal cells associated with a particular leukemia or lymphoma. These antibodies were often linked with a fluorescent or a chemical indicator that would make these abnormal cells visible when observed under a microscope. This approach, called immunohistochemistry, is used every day for some leukemia and lymphoma markers and other types of cancer. It may be because the markers of interest are not available for flow cytometry or because fresh cells or tissue are not available (a requirement for flow cytometry immunophenotyping).

View Sources

Sources Used in Current Review

Seiter, K. (2018 July 17, Updated). Acute Lymphoblastic Leukemia (ALL). Medscape Hematology. Available online at https://emedicine.medscape.com/article/207631-overview. Accessed January 2020.

Kanwar, V. et. al. (2019 January 3, Updated). Pediatric Acute Lymphoblastic Leukemia. Medscape Pediatrics: General Medicine. Available online at https://emedicine.medscape.com/article/990113-overview. Accessed January 2020.

(2018 March 12). Acute Lymphoblastic Leukemia. NCCN Clinical Practice Guidelines in Oncology. Available online at https://www.nccn.org/professionals/physician_gls/pdf/all.pdf. Accessed January 2020.

Lamb, A. et. al. (2019 January, Updated).Acute Lymphoblastic Leukemia – ALL. ARUP Consult. Available online at https://arupconsult.com/content/acute-lymphoblastic-leukemia. Accessed January 2020.

(2018 October 17, Revised). Tests for Acute Lymphocytic Leukemia (ALL). American Cancer Society. Available online at https://www.cancer.org/cancer/acute-lymphocytic-leukemia/detection-diagnosis-staging/how-diagnosed.html. Accessed January 2020.

(2016 February 3, Revised). How Is Childhood Leukemia Diagnosed? American Cancer Society. Available online at https://www.cancer.org/cancer/leukemia-in-children/detection-diagnosis-staging/how-diagnosed.html. Accessed January 2020.

Sources Used in Previous Reviews

Craig, F. and Foon, K. (2008 April 15). Flow cytometric immunophenotyping for hematologic neoplasms. Blood Journal v111 (8) [On-line information]. Available online at http://bloodjournal.hematologylibrary.org/content/111/8/3941.full. Accessed April 2011.

Jaffe, E. et. al. (2008 December 1). Classification of lymphoid neoplasms: the microscope as a tool for disease discovery. Blood. 2008 December 1; 112(12): 4384–4399. [On-line information]. Available online at http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2954680/. Accessed April 2011.

(Updated 2011 March 13). Blood Tests. Leukemia & Lymphoma Society [On-line information]. Available online through http://www.lls.org. Accessed April 2011.

Torpy, J. (2009 January 28). Acute Lymphoblastic Leukemia. JAMA Patient Page V301 (4) [On-line information]. PDF available for download at http://jama.ama-assn.org/content/301/4/452.full.pdf. Accessed April 2011.

Bahler, D. (Updated 2011 February). Lymphoma Phenotyping. ARUP Consult [On-line information]. Available online at http://www.arupconsult.com/Topics/LymphomaPhenotyping.html. Accessed April 2011.

(© 1995–2011). Unit Code 3287: Leukemia/Lymphoma Immunophenotyping by Flow Cytometry. Mayo Clinic, Mayo Medical Laboratory [On-line information]. Available online at http://www.mayomedicallaboratories.com/test-catalog/Overview/3287. Accessed April 2011.

(Reviewed 2010 December). Lymphoid Neoplasms Laboratory Support of Diagnosis and Management Test Guide. Quest Diagnostics [On-line information]. Available online at http://www.questdiagnostics.com/hcp/intguide/jsp/showintguidepage.jsp?fn=TG_Lymphoid_Neoplasms.htm. Accessed April 2011.

Wittwera, C. and Brown, M. (2000). Flow Cytometry: Principles and Clinical Applications in Hematology Clinical Chemistry 46:8(B) 1221–1229 [On-line information]. Available online at http://www.clinchem.org/cgi/content/full/46/8/1221. Accessed April 2011.

Mayo Clinic Staff (2010 November 24). Chronic lymphocytic leukemia. MayoClinic [On-line information]. Available online at http://www.mayoclinic.com/health/chronic-lymphocytic-leukemia/DS00565. Accessed April 2011.

Acute Leukemia. Merck Manual for Healthcare Professionals [On-line information]. Available online at http://www.merckmanuals.com/professional/sec11/ch142/ch142b.html. Accessed April 2011.

Chen, Y. (Updated 2014 March 23). B-cell leukemia/lymphoma panel. MedlinePlus Medical Encyclopedia [On-line information]. Available online at http://www.nlm.nih.gov/medlineplus/ency/article/003518.htm. Accessed December 2014.

(© 1995–2014). Leukemia/Lymphoma Immunophenotyping by Flow Cytometry. Mayo Clinic Mayo Medical Laboratories [On-line information]. Available online at http://www.mayomedicallaboratories.com/test-catalog/Overview/3287. Accessed December 2014.

Maecker, H. et. al. (2012 February 17). Standardizing immunophenotyping for the Human Immunology Project. Nat Rev Immunol v12 (3): 191–200. [On-line information]. Available online at http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3409649/. Accessed December 2014.

(Reviewed 2013 July 10). Leukemia – Acute Lymphocytic (Adults). American Cancer Society [On-line information]. Available online at http://www.cancer.org/acs/groups/cid/documents/webcontent/003109-pdf.pdf. Accessed December 2014.

(2013 December 11). Understanding Laboratory Tests. National Cancer Institute [On-line information]. Available online at http://www.cancer.gov/cancertopics/factsheet/detection/laboratory-tests. Accessed December 2014.

(Revised 2012). Understanding Lab and Imaging Tests. Leukemia & Lymphoma Society [On-line information]. Available online through http://www.lls.org. Accessed December 2014.

Ask a Laboratory Scientist

This form enables patients to ask specific questions about lab tests. Your questions will be answered by a laboratory scientist as part of a voluntary service provided by one of our partners, American Society for Clinical Laboratory Science. Please allow 2-3 business days for an email response from one of the volunteers on the Consumer Information Response Team.