Cerebrospinal Fluid (CSF) Testing

Cerebrospinal fluid (CSF) testing may be used to help diagnose a wide variety of diseases and conditions affecting the brain and spinal cord (central nervous system). Some examples include:

• Infections, such as meningitis and encephalitis—testing is used to determine if infection is caused by bacteria, viruses or, less commonly, by Mycobacterium tuberculosis, fungi or parasites, and to distinguish them from other conditions. CSF testing may also be used to detect infections of or near the spinal cord.
• Bleeding (hemorrhaging) around the brain
• Autoimmune disorders that affect the central nervous system, such as Guillain-Barré syndrome or multiple sclerosis
• Tumors located within the central nervous system (primary) or cancers that spread to the central nervous system (metastatic cancer)
• Alzheimer disease, an irreversible form of dementia

CSF testing usually involves an initial, basic set of tests performed when CSF analysis is requested:

• CSF color, clarity and pressure during CSF collection
• CSF protein
• CSF glucose
• CSF cell count (total number of cells present)
• CSF differential cell count (numbers of different types of cells present)
• If infection is suspected, CSF Gram stain, routine culture and molecular tests that detect the genetic material of any microbes present

A wide variety of other tests may be ordered as follow-up depending on the results of the first set of tests or the suspected diagnosis. The specific tests that are ordered depend on your signs and symptoms and the disease your healthcare practitioner suspects may be the cause. Each of these tests can be grouped according to the type of exam that is performed. For more, see Details on CSF Tests below.

CSF testing may be ordered when your healthcare practitioner suspects that you have a condition or disease involving your central nervous system. It may be ordered when:

• You have suffered trauma to the brain or spinal cord
• You have been diagnosed with cancer that may have spread into the central nervous system
• Your medical history and/or signs or symptoms suggest a condition affecting your central nervous system. The signs and symptoms of central nervous system conditions can vary widely and many overlap with a variety of diseases and disorders. They may have sudden onset, suggesting an acute condition, such as central nervous system bleeding or infection, or may be slow to develop, indicating a chronic disease, such as multiple sclerosis or Alzheimer disease.

CSF testing may be ordered when you have some combination of the following signs and symptoms, especially when accompanied by flu-like symptoms that intensify over a few hours to a few days and fever:

• Changes in mental status and consciousness
• Sudden, severe or persistent headache or a stiff neck
• Confusion, hallucinations or seizures
• Muscle weakness or lethargy, fatigue
• Nausea (severe or prolonged)
• Sensitivity to light
• Numbness or tremor
• Dizziness
• Difficulties with speech
• Difficulty walking, lack of coordination
• Mood swings, depression
• Infants may be increasingly irritable, cry when they are held, have body stiffness, refuse food, and have bulging fontanels (the soft spots on the top of the head)

CSF usually contains a small amount of protein and glucose and may have a few white blood cells.

Any condition that disrupts the normal pressure or flow of CSF or the protective ability of the blood-brain barrier can result in abnormal results of CSF testing. For detailed explanations of what various test results may mean, see the section below, Details on CSF Tests

The lumbar puncture is usually performed while you are lying on your side in a curled up fetal position but may sometimes be performed in a sitting position. It is important that you remain still during the procedure. Once you are in the correct position, your back is cleaned with an antiseptic and a local anesthetic is injected under the skin. When the area has become numb, a special needle is inserted through the skin, between two vertebrae, and into your spinal canal. An “opening” or initial pressure reading of the CSF is obtained. The healthcare practitioner then collects a small amount of CSF in multiple sterile vials. A “closing” pressure is obtained, the needle is withdrawn, and a sterile dressing and pressure are applied to the puncture site. You will then be asked to lie quietly in a flat position, without lifting your head, for one or more hours to avoid a potential post-test headache.

The lumbar puncture procedure usually takes less than half an hour. For most patients, it is a moderately uncomfortable procedure. The most common sensation is a feeling of pressure when the needle is introduced. Let your healthcare provider know if you experience a headache or any abnormal sensations, such as pain, numbness, or tingling in your legs, or pain at the puncture site.

The lumbar puncture is performed low in the back, well below the end of the spinal cord. There are spinal nerves in the location sampled, but they have room to move away from the needle. There is the potential for the needle to contact a small vein on the way in. This can cause a “traumatic tap,” which just means that a small amount of blood may leak into one or more of the samples collected. While this is not ideal, it does occur a small percentage of the time. The evaluation of your results will take this into account.

Headaches are relatively common after a lumbar puncture and can occur immediately or up to a day or two after the sample collection. Lying flat after the procedure can help avoid and treat the headaches. Other potential treatments include drinking water (to stay hydrated), caffeine, and pain medication. Follow your healthcare practitioner’s recommendations and let them know if the pain persists.

Yes. Sometimes it will be performed to introduce anesthetics or medications into the central nervous system. Sometimes, one or more lumbar punctures and removal of CSF may be used to decrease CSF pressure.

CSF is often the best sample to use for diagnosing conditions affecting your central nervous system because this fluid surrounds your brain and spinal cord. Central nervous system infections or diseases are most easily and rapidly identified by CSF testing, as these conditions typically lead to changes in the makeup of the spinal fluid. Tests on blood and urine may be used in conjunction with CSF analysis to evaluate your condition, however the evaluation of these specimens alone cannot be relied on to establish the presence of disease in the central nervous system.

Other laboratory tests that may be ordered along with or following CSF testing include:

• Blood culture—to detect and identify bacteria or fungi in the blood
• Culture and/or molecular testing of specimens collected from other possible sites of infection that led to meningitis or encephalitis
• Blood glucose, total protein—to compare with CSF glucose and protein levels
• CBC (complete blood count)—to evaluate cell counts in blood
• Blood tests (serologic testing) to detect proteins released from disease-causing microbes (pathogens) or antibodies against a variety of pathogens, such as West Nile Virus and other arboviruses
• CRP (C-reactive protein)—this is the preferred test to detect inflammation. An ESR (erythrocyte sedimentation rate) may be done instead if CRP is not available.
• CMP (comprehensive metabolic panel)—a group of tests used to evaluate electrolyte balance and the health of your organs

To help diagnose a central nervous system-related illness, a healthcare provider may want to know about recent vaccinations, sickness, contact with others who are ill, places you have traveled, signs and symptoms, and their duration.

Pressure of the CSF can be measured when opening (starting) and closing (finishing) the collection.

• Increased CSF pressure may be seen with a variety of conditions that increase pressure within the brain or skull and/or obstruct the flow of CSF, such as tumors, infection, abnormal accumulation of CSF within the brain (hydrocephalus), or bleeding.
• Decreased pressure may be due to dehydration, shock, or leakage of CSF through an opening (e.g., another lumbar puncture site or sinus fracture).

The appearance of the sample of CSF is usually compared to a sample of water.

• Color of the fluid—normal is clear and colorless. Changes in the color of the CSF are not diagnostic but may point to additional substances in the fluid. Yellow, orange, or pink CSF may indicate the breakdown of blood cells due to bleeding into the CSF or the presence of bilirubin. Green CSF may also sometimes be seen with bilirubin or infection.
• Turbidity—cloudy or turbid CSF may indicate the presence of white or red blood cells, microbes, or an increase in protein levels.
• Viscosity—normal CSF will have the same consistency as water. CSF that is “thicker” may be seen in people with certain types of cancers or meningitis.

Chemical tests detect or measure the chemical substances found in spinal fluid. Many of the substances in CSF are also in blood and the relative amounts in CSF and blood are often compared. Normally, levels of certain substances in CSF, such as protein and glucose, mirror the levels in blood.

• CSF glucose—normal is about 2/3 the concentration of blood glucose. Glucose levels may decrease when cells that are not normally present use up (metabolize) the glucose. These may include bacteria, white blood cells, or cells shed by tumors.
• CSF protein—only a small amount is normally present in CSF because proteins are large molecules and do not cross the barrier between the blood and brain easily. Decreases in CSF protein are not generally considered significant. Increases in protein are most commonly seen with:
  • Meningitis and brain abscess
  • Brain or spinal cord tumors
  • Multiple sclerosis
  • Guillain-Barré syndrome
  • Syphilis

If any of the initial tests are abnormal or if your healthcare practitioner has reason to suspect a specific condition, then additional testing may be ordered. This may include one or more of the following:

• CSF protein electrophoresis—separates different types of protein; oligoclonal bands are often seen with multiple sclerosis and sometimes with other conditions.
• CSF IgG (Immunoglobulin G)—increased in some conditions, such as multiple sclerosis, herpes encephalitis, connective tissue diseases
• Myelin basic protein—seen when the covering of nerves (myelin) breaks down, such as with multiple sclerosis
• CSF lactate—often used to distinguish between viral and bacterial meningitis; the level will usually be increased with bacterial and fungal meningitis while it will remain normal or only slightly elevated with viral meningitis.
• CSF lactate dehydrogenase (LD, LDH)—used to differentiate between bacterial and viral meningitis; the level is usually increased with bacterial meningitis and not with viral meningitis; may also be elevated with leukemia or stroke.
• Tumor markers—carcinoembryonic antigen (CEA), alpha-fetoprotein (AFP), and human chorionic gonadotropin (hCG) may be increased in cancers that have spread from other sites in the body (metastatic).
• Amyloid beta 42 (Aß42) and tau protein—used in the evaluation of Alzheimer disease; in a symptomatic person, a low Aß42 CSF level along with a high tau level reflects an increased likelihood of Alzheimer disease.
• Beta-2 transferrin—this is a protein present only in CSF. This test may be done if it is suspected that trauma to the central nervous system has caused a leak of CSF from the central nervous system. A sample of fluid leaking from the nose or ears is collected and tested. A positive test for beta-2 transferrin means the fluid is CSF.

Normal CSF has no or very few cells present and appears clear. A small drop of CSF is examined using a microscope, and cells are counted manually (or in some cases counted using an instrument). If the number of white blood cells present is very few (for example, 5 or less in an adult), the laboratory may or may not identify them or perform a cell differential (see below).

If white blood cells are numerous (such as greater than 5), a differential will most likely be done to determine the different kinds of white blood cells that are present. If cancer is suspected or has been previously diagnosed, a differential is always performed.

• CSF total cell counts
  • Red blood cell (RBC) count—normally no red blood cells are present in the CSF. The presence of red blood cells may indicate bleeding into the CSF or may indicate a “traumatic tap” – blood that leaked into the CSF sample during collection.
  • White blood cell (WBC) count—normally very few white blood cells are present. A significant increase in white blood cells in the CSF can be caused by infection or inflammation of the central nervous system.

• CSF white blood cell (WBC) differential—identifies and counts the different types of WBCs that are present. Small numbers of lymphocytes, monocytes (and, in neonates, neutrophils) are normal in a sample of CSF. There may be:
  • An increase in neutrophils with a bacterial infection
  • An increase in lymphocytes with a viral or fungal infection
  • Sometimes an increase in eosinophils with a parasitic infection
  • A slight increase in lymphocytes with immune disorders of the central nervous system, such as multiple sclerosis
  • Presence of abnormal WBCs with leukemia that has spread to the central nervous system
  • Abnormal cells from cancerous tumors present; if they are seen on a differential, CSF cytology will be performed (see below).

There may be an increase in the different types of WBCs with a variety of other conditions, including brain abscess, following seizures or bleeding around the brain, metastatic tumor, and inflammatory disorders such as sarcoidosis.

• CSF cytology—a CSF sample is specially treated so that a microscope can be used to look for abnormal cells. This is often done when a central nervous system tumor or metastatic cancer is suspected. The presence of certain abnormal cells, such as tumor cells or immature blood cells, can indicate the type of cancer present.

Normally, CSF does not contain any bacteria, fungi, viruses or parasites.

If meningitis or encephalitis is suspected, select tests may be performed to detect and identify microbes. The selection of testing is frequently done based on signs and symptoms, the health of your immune system, and possible exposure to certain pathogens. Some of the more frequently performed tests are listed below.

• CSF Gram stain—this test is always performed on CSF when infection is suspected. A sample of CSF is centrifuged and the concentrated portion is placed on a slide and treated with a special stain. A laboratory professional examines the slide using a microscope to look for bacteria or fungi, which can indicate bacterial or fungal meningitis.
• CSF culture—culture is used to detect any bacteria or fungi in the sample. A negative culture does not rule out an infection because the microbes may be present in small numbers or unable to grow in culture due to prior antibiotic therapy.
• Molecular testing of the CSF by polymerase chain reaction (PCR) assays can be performed to detect nucleic acid from various pathogens that may be present in the sample. This method detects bacterial, viral, fungal or parasitic genetic material (DNA, RNA) and is particularly helpful if the microbe does not grow in routine culture or if the patient has been on antibiotics.
• Tests to detect antibodies produced by the immune system against specific disease-causing microbes may be helpful in infections where culture and molecular testing are insensitive (e.g., West Nile virus, Lyme disease that infects the nervous system, etc.).
• Testing of CSF to detect proteins or antigens released by certain microbes, including the fungi Cryptococcus neoformans/gattii or Histoplasma capsulatum, may also be performed depending on exposure risk and signs and symptoms (see also Fungal Tests).

Other CSF tests for infectious diseases that are less commonly ordered include:

• CSF AFB testing—used to detect infection with mycobacteria, such as Mycobacterium tuberculosis; molecular tests specific for M. tuberculosis may be performed when tuberculosis is suspected.
• Tests for parasites—parasites may be detected in CSF with laboratory tests such as molecular tests, culture or microscopic exam. Infections of the central nervous system by parasites are rare and frequently are rapidly lethal. One example is an infection caused by the free-living amoeba, Naegleria fowleri, a single-cell parasite that can be found in warm water lakes and rivers. You can become infected if you swim in contaminated water and the parasite enters your respiratory system through your nose.
• CSF syphilis testing (VDRL)—may be positive in people with neurosyphilis, which occurs when the syphilis bacterium infects the brain. A negative result does not necessarily rule out infection of the brain.